alignment block getter for getting blocks of alignment from specific alignments
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Updated
Sep 22, 2024 - Go
alignment block getter for getting blocks of alignment from specific alignments
Viral genomics analysis pipelines
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
maf to panache and extracting all snps and pangenome specific information.
plotting and summary information tools for the mRNA proteome to genome alignments.
Nextflow pipeline to assemble genomes from nanopore reads.
Python library to facilitate genome assembly, annotation, and comparative genomics
a string extraction and checker written for pacbiohifi and oxford nanopore reads
easing your access to arabidopsis tair
quality control, genome assembly, mapping for miseq, novaseq and nextseq reads
PacbioHifi genome assembly benchmarks
Bioinformatics on GCP, AWS or Azure
UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023
A collection of publications on comparison of high-throughput sequencing technologies.
De novo assembly of the red legged patridge (Alectoris rufa) genome
A Python script that align SARS-CoV-2 genomes identifying and reporting pointwise variations.
FQSqueezer - FASTQ compressor based on k-mer statistics
Asynchronous Distributed Actor-based Approach to Jaccard Similarity for Genome Comparisons
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
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